When bare shafting, start with the weight up front that you want and trim slowly. The reason the nock on the one arrow is higher doesn't have anything to do with the weight on the tip - it is either a bad release or your nocking point is too high.
I assume you are right handed? Also, you didn't indicate how far the shot is. if it is 20 yds., no more than an 1/8th if 10 you might be ok with 1/4". Go slow, cutting an arrow down has a lot of effect on spine.
When I start with full length shafts and my bare shaft groups are 10" from center I will start with 1/2" cut and see how far it moves the group. After a cut or two I'll be down to 1/8" at a time. At the end when I am just fine tuning I'll cut 1/16" at a time.