Although the actual nocking points may be the same height above the shelf for both bows, the effect of those nocking points on arrow flight is not the same. The tiller of the bow means the relative strength of the upper and lower limbs. We set the nocking point based on the tiller of the bow and how we grip the bowstring. You probably grip the bowstring the same, but the tiller of the two bows is probably different. The best way to set the nocking point is to shoot a bare shaft, and move the nocking point up and down until you have level bare shaft flight, or slightly nock high bare shaft flight. When the bare shaft flight is the same for both bows, then the nocking point is truly the same, even though it might be located in a different position relative to the shelf from one bow to the other.
Incidently, it is unlikely that you are optimizing your bows by shooting the same arrow out of them. A 57# recurve will require a differently spined arrow than a 48# longbow.