External ballistics depends on quite a few variables, however your "FOC" is not one of them...
"FOC" (as applied here in archery) could throw off your projectiles balance, and thus hurt the trajectory, but if tuned properly.....
a projectile with the same weight, same velocity, and same coefficient of drag, having the same external variables in effect (such as atmospheric conditions/wind/humidity/etc) will have the same trajectory...
Now, the whole FOC thing is not so much about trajectory, but more so about the whole kinetic energy VS momentum as the projectile travels through medium (tissue, i.e. animal).
According to some, the high FOC will allow for better penetration through said medium, but no such claims have been made that the FOC would improve/impair the arrows trajectory...
In fact one of Dr Ashby's repots indicated that many steer away from the high FOC because of the misnomer that arrows with a high FOC will take a nose dive. He illustrated in his testing that the difference in trajectory from a standard FOC, HFOC, and EFCO arrow was minimal at best and for most purposes inconsequential... as long as everything was in TUNE and all external factors were equal.
Just my 2cents....