Difference in loop weight is minimal, even with a padded loop. Flemish has more strands, endless is served. Not going to be enough to make a noticeable difference.
1/2" in brace height is significant, and will usually affect tuning.
The string isn't going to move "harder". The draw weight is what it is--the string won't affect that one way or the other.
A tighter nock fit would make a difference.
More than likely it's the difference in materials.
Materials with Vectran (450+, 452X, BCY-X) have much less elasticity than 100% Dyneema materials (Dynaflight '10/Force 10, Dynaflight '97, 8125G, 8190).
More elasticity will allow the string to travel forward more, especially with lower strand counts.
That is why you can generally get away with a lower brace height when using high performance materials vs. Dacron/polyester. Polyester has a lot of elasticity.