You are getting some great advice, however it is beginning to sound like a shooting technique problem. If I am not being too forward, I would suggest that you place a small piece of leather or tooth pick(flat kind)on your shelf under your shelf material. That would have the effect of providing you a little more space and at least for me on some bows has eliminate that clunk. You might want to check your shelf for wear, it could give you a clue if your are having specific tuning problems, if the nocking point is too high, the arrow will slam into the shelf, causing the noise you described. It can also cause your arrows to exhibit nock high character, and impact higher on the target. Remember, when bare shaft tuning, you should be more concerned about the arrows attitude in flight, and not where the nock is pointed when it hits the target.