My Shawnee Cougar did the same thing, more when the brace height was lowered. Just feels funny but I also called the bowyer and Bob assured me it was OK and gave mer the same good advice as Pete W. has here.
As for the damaged nocks, well depends if you are sanding them to fit a thick serving you have to be a bit more careful to examine the nock before each shot. I also notice that a nock ready to split will feel real loose on the seving even though you may not see the fatigue and subsequent split.