The screw in points is self centering on the inside of the shaft. They can't be crooked. An uneven end on the shaft will cause it to break easier, but it will not change the alignment of the point. Now, if the point is turned over on the end, or the point itself is not centered, it will cause the arrow to wobble when you spin it. The problem may be in your points. If you have any different screw in points, try them. If the insert isn't fully seated into the shaft such that the point shaft isn't fully enclosed within the arrow shaft, that could result in the point being on crooked. The only other explanation is a crooked shaft, and axis shafts are supposedly straight to .003. Well, if the nock is on crooked, it will make a straight shaft look crooked when it's spun. I
assume when you say spin the arrow, you're spinning it like a top on a hard surface. If you're saying it's wobbling when you shoot it, that brings in a whole nother set of possibilities.
Might you have some pictures you can show us.