Shortening the bottom limb makes it balance better in the bow hand, and I prefer it that way because it's not only better balanced to carry, it's also better balanced to swing, point, and hold on target the way I shoot.
And yes, there are other reasons. Shortening the bottom limb moves the bow's longitudinal center upwards, closing the spread between static balance, string hand fulcrum, and dynamic balance at full draw. This makes the bow limb/balanced better throughout the entire draw cycle, easier to synchronize the limbs, less handshock, treats the arrow better upon release, etc... all imho of course.
I hope I said all that right... I'm in a hurry.