There are many, many excellent canoe areas to choose from, however, hunting in the wilderness areas of the Adirondacks is challenging even with a rifle. If you see a deer on your trip you should consider it an enormous success. If you are primarily interested in a great canoe trip with the opportunity to wander around with your bow there are many places that fit the bill. If you are primarily interested in an opportunity to see deer, that's a different story.
If it were me, I would look toward the southern region in the park, maybe around speculator, maybe siamese ponds wilderness area. I have seen 10x the number of deer in that region than I have seen in the high peaks, or even some of the more remote areas surrounding the high peaks. Given the type of winter we're having, the deer population will likely have taken a big hit on the tug hill plateau. You might want to avoid that area.
If you are willing to carry a canoe in on your back to some very nice pond/lakes, I have a couple of places that would be very nice to camp, canoe, hunt and fish.
It really just depends on your priorities.