It's important to me to have things right with my gear, I don't really care what others do. Besides, my way is certainly not the only way to get a tuned bow. That said, once you get the hang of it bare shaft tuning it's so easy that it...well it's easy.
I'm assuming we agree that the point of fletching is to correct an improper balance between spine, shaft length, point weight, characteristics of the bow, and the shooters form. Tuning with bare shafts balances the system almost completely, add feathers and you get a much more stable and forgiving system, especially when you stick a broadhead on the front. No doubt it's more difficult to do with woodies, but then I remember I used to shoot all my woodies and select the ones that consistently shot the best with broadheads and hit the same spot as my field points. Same goal, much less efficient process. Much as I love wooden arrows, they are not as consistent and don't lend themselves as well to precise tuning as carbon or aluminum, at least not in my experience. A bit more trial and error with woodies, but then woodies are a labor of love anyway.