The AMO method is to measure your arrow from base of point to valley of nock. This is your total arrow length. Then, balance your arrow on something fairly narrow (pencil, triangular ruler). Mark the balance point with a Sharpie and measure from the valley of the nock to the balance point. Divide the balance point measurement by the full lenght of the arrow, subtract 0.5 and multiply by 100 (to get percentage rather than dec imal value).
If the arrow balanced at the mid-point, and the arrow is 30" BOP to nock, you would have 15/30 = 0.5, minus 0.5 = 0*100 = 0%.
If it balanced 20" from the valley of the nock,
20/30 = .667, - .5 = 0.167 * 100 = 16.7% FOC.
By the way, if I calculate my arrow FOC using Stu's calculator, I get the same FOC, so I would guess that's the method Stu used in his calculator.